I am trying model to some snow processes for the whole US. I do have daily climate forcing time series for a 1 x 1 km raster in a Lambert Conformal Conic Projection (netCdf format). The MODIS snow cover time series for a grid of 500 m in a sinusoidal projection (hdf format) and snow depth data in a 1 km resolution grid (binary .dat file) in a Geographical projection.
I would like to get the time series for each variable in a 1x1 and 2x2 km grid. The question I have is how can this be achieved without using GIS Software. I know how to do this using ArcGIS, but since I do have a lot of files I think there must be a better way of doing this.
My model is in MATLAB, so if there is some toolbox that would achieve that it would be my first choice. However, I am open to other approaches and standalone tools.